PhyloGenes is a web resource that displays pre-computed phylogenetic trees of gene families alongside experimental gene function data to facilitate inference of unknown gene function in plants.

PhyloGenes is managed maintained by the nonprofit Phoenix Bioinformatics Corporation. It is co-developed by Phoenix Bioinformatics and the PANTHER project at University of Southern California, and is . Its initial development was supported by funding provided by the National Science Foundation (Grant No. DBI-1661543).

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Plant Direct. 2020 Dec;4(12):e00293

Current release (version

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4.1)

May 18November 15, 20212022. We are pleased to announce the  PhyloGenes version 34.1 release.  release. This release updates only the GO annotation data and the publications counts for the gene family members. The gene families and gene trees are the same as for the PhyloGenes 4.0 release and are still from the  PANTHER 1617.0 release.  In PhyloGenes only  genes from plant genomes and selected non-plant model organisms were included. Genes from other genomes in the PANTHER build have been removed (pruned).  More stats

Updated GO annotations: Experimental gene function annotations were extracted from the Gene Ontology Consortium (files created on 2021-04-01by PANTHER on 2022-10-27, based on the 2022-07-01 GO release). Phylogenetic inferred gene function annotations were extracted from the  GO PAINT project (files created on 2021-04-01 (generated on 2022-09-26, based on the 2022-07-01 GO release which uses PANTHER 15 tree information, downloaded by the PhyloGenes team on 2022-10-20).

Please take a few minutes to share with us your experience of using the PhyloGenes resource. 

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